Relating biomolecular data to denitrification rates in infiltrating river water – insights from enzyme-based reactive transport modelling

Biomolecular quantities like gene, transcript or enzyme concentrations related to a specific reaction promise to provide information about the turnover of nutrients or contaminants in the environment. Particularly transcript-to-gene ratios have been suggested to provide a measure for reaction rates but a relationship with rates currently lacks validation.
We applied an enzyme-based reactive transport model for denitrification and aerobic respiration at the river-groundwater interface to simulate the temporal and spatial patterns of transcripts, enzymes and biomass under diurnal dissolved oxygen fluctuations.
Our analysis showed that transcript concentrations of denitrification genes exhibit considerable diurnal fluctuations, whereas enzyme concentrations and biomass are stable over time. The daily fluctuations in denitrification rates yielded a poor correlation between rates and transcript and enzyme concentrations. Daily averaged reaction rates, however, show a close-to-linear relationship with enzyme concentrations and mean transcript concentrations.
Our findings suggest that, under dynamic environmental conditions, single-event sampling may result in the misinterpretation of biomelucular quantities as these relate to reaction rates. A better representation of rates can be achieved via sampling that captures the temporal variability of a particular system.