Microbial dispersal throgh dead-end cavities

Predicting dispersal patterns is important to understand microbial life in porous media as soils and sedimentary environments. We studied active and passive dispersal of bacterial cells in porous media characterized by two main pore features: fast channels and dead-end cavities. We combined experiments with microfluidic devices and time-lapse microscopy to track individual bacterial trajectories and measure the breakthrough curves and pore scale bacterial abundance. Escherichia coli cells dispersed more efficiently than the non-motile mutants showing a different retention in the dead-end pores. Our findings highlight the role of diffusion dominated dead-end pores on the dispersal of microorganisms in porous media.