The effect of habitat complexity on bacterial competition

The way microbes interact in nature can vary widely depending on the spatial characteristics they are located in. This aspect of the microbial environment can determine whether processes such as organic matter turnover, community dynamics, or microbial speciation, among others, occur and their impact on soil functions. Investigating how the geometry of microhabitats influences microbes has been traditionally challenging due to methodological limitations. A major challenge in soil microbial ecology is to reveal the mechanisms that allow a wide diversity of microorganisms to co-exist. This study is directed towards answering the question of how spatial complexity affects bacterial competition, and how this can lead to organic matter turnover.

Using microfluidic chips that mimic the inner soil pore physical geometry, and fluorescence microscopy, we followed the effect of an increasing complexity in the growth and substrate degradation of two soil bacterial strains. The parameters used to define complexity were two: the turning angle and order of pore channels, and the fractal order of pore mazes. When we tested the effect of an increasing in turning angle sharpness on microbial growth, we found that in sharper angles, both species coexisted, but only until certain sharpness where both populations decreased. We also found that substrate degradation was highest in the same sharp angles that permitted the coexistence of both strains. Our next series of experiments, testing the effect of maze fractal complexity showed that both strains could coexist and degrade the most substrate in complex mazes that had dead ends as opposed to mazes that were highly connected. Our results demonstrate the relevance of microhabitat complexity in bacterial competition and substrate degradation, showing that complex habitats allow bacterial strains to coexist and perform functions with higher efficiency than in less complex ones.